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affy mas5
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Affe package mas5 error
affy
affy mas5
6.0 years ago
yuyingxie
• 0
2
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6
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1.4k
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mas5 normalization gives negative values
affy mas5
updated 8.3 years ago by
James W. MacDonald
66k • written 8.3 years ago by
Angel
▴ 40
0
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8
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1.6k
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mas5calls error question
mas5 affy
mas5
affy mas5
mas5calls
affy
updated 8.5 years ago by
James W. MacDonald
66k • written 8.5 years ago by
suarez.samuel
• 0
8
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16
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3.2k
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matrix transposing in R
affy mas5
updated 8.9 years ago by
arfranco
▴ 130 • written 8.9 years ago by
Angel
▴ 40
4 results • Page
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
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